Publikationen

1. Liebers N, Bruch PM, Terzer T, Hernandez-Hernandez M, Paramasivam N, Fitzgerald D, Altmann H, Roider T, Kolb C, Knoll M, Lenze A, Platzbecker U, Röllig C, Baldus C, Serve H, Bornhäuser M, Hübschmann D, Müller-Tidow C, Stölzel F, Huber W, Benner A, Zenz T, Lu J, Dietrich S. «Ex vivo drug response profiling for response and outcome prediction in hematologic malignancies: the prospective non-interventional SMARTrial». Nat Cancer. 2023 Oct 2.

2. Lütge A, Lu J, Hüllein J, Walther T, Sellner L, Wu B, Rosenquist R, Oakes CC, Dietrich S, Huber W, Zenz T. «Subgroup-specific gene expression profiles and mixed epistasis in chronic lymphocytic leukemia». Haematologica 2023. 108:2664–2676.

3. Apostolova P, Kreutmair S, Toffalori C, Punta M, Unger S, Burk AC, Wehr C, Maas-Bauer K, Melchinger W, Haring E, Hoefflin R, Shoumariyeh K, Hupfer V, Lauer EM, Duquesne S, Lowinus T, Gonzalo Núñez N, Alberti C, da Costa Pereira S, Merten CH, Power L, Weiss M, Böke C, Pfeifer D, Marks R, Bertz H, Wäsch R, Ihorst G, Gentner B, Duyster J, Boerries M, Andrieux G, Finke J, Becher B, Vago L, Zeiser R. «Phase II trial of hypomethylating agent combined with nivolumab for acute myeloid leukaemia relapse after allogeneic haematopoietic cell transplantation-immune signature correlates with response». Br J Haematol. 2023 Oct; 203(2):264–281.

4. Hale BD, Severin Y, Graebnitz F, Stark D, Guignard D, Mena J, Festl Y, Lee S, Hanimann J, Zangger NS, Meier M, Goslings D, Lamprecht O, Frey BM, Oxenius A, Snijder B. «Cellular architecture shapes the naïve T cell response». Science. 2024 Jun 7;384(6700):eadh8697.

5. Pohly MF, Putzker K, Scheinost S, Ben Taarit L, Walther T, Kummer S, Wertheimer T, Lin M, Do THL, Handler K, Michler J, Kivioja J, Bach K, Kisele S, Kim J, Dietrich S, Bornhauser B, Wong WW, Becher B, Moor A, Lewis JD, Ficht XM, Lu J, Huber W, Zenz T. «IAP dependency of T-cell prolymphocytic leukemia identified by high-throughput drug screening». Blood. 2025 Jan 27:blood.2024027171.

6. Chong SJF, Lu J, Valentin R, Lehmberg TZ, Eu JQ, Wang J, Zhu F, Kong LR, Fernandes SM, Zhang J, Herbaux C, Goh BC, Brown JR, Niemann CU, Huber W, Zenz T, Davids MS. «BCL-2 dependence is a favorable predictive marker of response to therapy for chronic lymphocytic leukemia». Molecular Cancer 24, 62 (2025)

7. Borgsmüller N, Kuipers J, Gawron J, Roncador M, Pohly M, Acar E, Do THL, Reisenauer S, Feldkamp MJ, Beisel C, Zenz T, Moor A, Beerenwinkel N. DemoTape: Computational demultiplexing of targeted single-cell sequencing data. bioRxiv 2024.12.06.627152.

Internationale Konferenzbeiträge:

1. Apostolova P, Kreutmair S, Toffalori C, Punta M, Unger S, Burk AC, Wehr C, Maas-Bauer K, Melchinger W, Haring E, Hoefflin R, Shoumariyeh K, Hupfer V, Lauer EM, Duquesne S, Lowinus T, Gonzalo Núñez N, Alberti C, da Costa Pereira S, Merten CH, Power L, Weiss M, Böke C, Pfeifer D, Marks R, Bertz H, Wäsch R, Ihorst G, Gentner B, Duyster J, Boerries M, Andrieux G, Finke J, Becher B, Vago L, Zeiser R.Br J Haematol. 2023 Oct; 203(2):264–281. doi: 10.1111/bjh.19007. Epub 2023 Aug 4.PMID: 37539479.

2. Wertheimer T, Baniadam H, Reisenauer S, Pohly M, Rindlisbacher L, Lin M, Kreutmair S, Unger S, Kivioja J, Moor A, Becher B, Huber W, Zenz T. «Dissecting the Single Cell Landscape of Leukemic Mantle Cell Lymphoma». ASH – Annual Meeting and Exposition – Session 622. Lymphomas: Translational – Non-Genetic: Illuminating the Tumor Microenvironment and Immune Landscape in Lymphoma.

3. Baniadam H, Wertheimer T, Reisenauer S, Gutwein O, Huong Lan Do T, Pohly M, Cannizzaro E, Rindlisbacher L, Kreutmair S, Unger S, Ulutekin C, Vermeer M, Sparano C, Moor A, Huber W, Becher B, Zenz T. «Deciphering the Dynamics of the B-NHL Single-Cell Landscape during BTK Inhibition». ASH – Annual Meeting and Exposition – Session 622. Lymphomas: Translational – Non-Genetic:  Illuminating the Tumor Microenvironment and Immune Landscape in Lymphoma.

4. Do THL, Lohoff C, Jung F, Kummer S, Benes V, Huber W, Lu J, Zenz T. «Cancer pathway connectivity resolved by drug perturbation and RNA sequencing». Poster presented at: 66th ASH Annual Meeting, 2024, San Diego, USA.

5. Lin M. «Deciphering the immune landscape of B-cell non-Hodgkin’s lymphoma patients under in vitro and in vivo drug perturbation». Poster presented at: Croucher Summer Course on Translational Immunology, 2024, Hong Kong, Hong Kong S.A.R., China.

6. Mamozai W, Boschet E, Bögeholz J, Ceriani L, Zimmermann K, Wertheimer T, Gutwein O, Reisenauer S, Pohly M, Beerenwinkel N, Snijder B, Papadopoulou V, Manz M, Bühler M, Bourquin J-P, Schneidawind D, Becher B, Balabanov S, Moor A, Huber W, Schetelig J, Zenz T#, Kreutmair S#. «INTeRCePT2.0 – Feasibility study for individualized risk profiling in lymphoma patients receiving CAR T-cell therapy». EHA-SfPM Precision Medicine Meeting, 2024, Kopenhagen, Dänemark.

7. Zenz T. «Targeting heterogeneity in CLL: Pathway connectivity resolved by drug perturbation and RNA sequencing». EHA-SfPM Precision Medicine Meeting, 2024, Kopenhagen, Dänemark.

8. Bornhauser B. «Precision medicine in childhood leukemia». EHA-SfPM Precision Medicine Meeting, 2024, Kopenhagen, Dänemark.

9. Kreutmair S, “CAR T cells and their immune environment shape distinct immune profiles in response and toxicity in B cell lymphoma patients”, Swiss Oncology & Hematology Congress 2024, Basel, Schweiz.

1. Salzmann L, Bichsel O, Ravi DK, Lestoille M, Easthope CA, Baumann CR, Luft AR, Taylor WR, Gassert R, Lambercy O. «Neurofeedback for precision rehabilitation of Parkinson’s patients». Brain Stimulation: Basic, Translational, and Clinical Research in Neuromodulation 2023; 16(1).

2. Conde C, Lang C, Baumann CR, Easthope CA, Taylor WR, Ravi DK. «Triggers for Freezing of Gait in Individuals with Parkinson’s Disease: A Systematic Review». Frontiers in Neurology: Sec. Movement Disorders; 2023; Volume 14 https://doi.org/10.3389/fneur.2023.1326300.

3. Pohl J, Ryser A, Veerbeek JM, Verheyden G, Vogt JE, Luft AR, Easthope CA. «Classification of Functional and Non-functional Arm Use by Inertial Measurement Units in Individuals with Upper Limb Impairment after Stroke». Frontiers of Physiology. 28. Sept 2022, Vol 13.

4. Pohl J, Ryser A, Veerbeek JM, Verheyden G, Vogt JE, Luft AR, Easthope CA. «Accuracy of Gait and Posture Classification using Movement Sensors in Individuals with Mobility Impairment after Stroke». Frontiers of Physiology. 26. Sept 2022, Vol. 13

5. Neumann S, Ducrot M, Vavanan M, Naef A, Easthope CA. «Providing Personalized Gait Feedback in Daily Life». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

6. Nastasi L, Jelitto R, Lestoille M, Branscheidt M, Luft AR, Gassert R, Easthope CA, Lambercy O. «Towards Personalized Real-time Biofeedback for Gait: Implementation of a Co-design Process to Improve Usability». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

7. Naef A, Berthet M, Böni A, Nastasi L, Branscheidt M, Luft AR, Lambercy O, Gassert R, Easthope CA. «Closing the loop – Implementing personalized real-time biofeedback for gait rehabilitation in stroke and Parkinson’s patients». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

8. Legrand M, Magrini C, Branscheidt M, Gassert R, Lambercy O, Easthope CA. «Augmented feedback to influence gait symmetry: a feasibility study to quantify effects on the global gait pattern». In Heidelberg: IEEE BIOROB; 2024.

9. Legrand M, Hess J, Luft A, Gassert R, Lambercy O, Easthope CA. «Balance training in Virtual Reality: influence of the frequency and the amplitude of the environment motion on body sway». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

10. Böni A, Menard T, Ryser A, Legrand M, Ravi DK, Branscheidt M, Vogt JE, Luft AR, Easthope CA. «Towards AI-Driven clinical decision support for post-stroke gait rehabilitation». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

11. Böni A, Maffei T, Ryser A, Legrand M, Ravi DK, Branscheidt M, Vogt JE, Luft AR, Easthope CA. «AnomGait: Data-driven extraction of movement features using contrastive learning». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

12. Berthet M, Naef A, Branscheidt M, Luft AR, Lambercy O, Easthope CA, Gassert R. «Protocol to Assess Cognitive Load During Real-time Biofeedback Training and its Effect on Gait Performance». In: Converging Clinical and Engineering Research on Neurorehabilitation V. La Granja: ICNR; 2024.

13. Kasties V, Meier N, Moser NH, Sassenburg R, Karlen W, Ferster ML, Fattinger S, Maric A, Huber R. Longer Interstimulus Intervals Enhance Efficacy of Automated Phase-Targeted Auditory Stimulation on Procedural Memory Consolidation». bioRxiv. 2024:2024-12.

14. C Lang, JH van Dieen, MA Brodie, J Welzel, W Maetzler, NB Singh, DK Ravi. «Complexities and challenges of translating intervention success to real world gait in people with Parkinson’s disease». Frontiers in Neurology, 2024.

15. G Amprimo, Z Mei, C Ferraris, G Olmo, DK Ravi. «A Data-driven Exploration and Prediction of Deep Brain Stimulation Effects on Gait in Parkinson’s Disease». IEEE Journal of Biomedical and Health Informatics, 2024.

16. Salzmann L, Bichsel O, Rohr-Fukuma M, Charrin TD, Naef AC, Stieglitz L, Oertel M, Bujan B, Jedrysiak P, Imbach LL, Lambercy O, Gassert R. «DBS neurofeedback for motor task enhancement in Parkinson’s disease». In preparation.

Internationale Konferenzbeiträge:

1. Sutter TM, Manduchi L, Ryser A, Vogt JE. «Learning Group Importance using the Differentiable Hypergeometric Distribution». 2023. 11th International Conference on Learning Representations, ICLR 2023, Kigali, Rwanda.

2. Sutter* TM, Ryser* A, Liebeskind J, Vogt JE. «Differentiable Random Partition Models». 36th Conference on Neural Information Processing Systems. 2023. New Orleans, USA.

3. Sutter* TM, Ryser* A, Liebeskind J, Vogt JE. «Uncovering Latent Structure Using Random Partition Models. Workshop on Structured Probabilistic Inference & Generative Modeling». 2023. International Conference on Machine Learning, Honolulu, Hawaii.

4. Sutter* TM, Ryser* A, Liebeskind J, Vogt JE. «Differentiable Set Partitioning. Workshop Differentiable Almost Everything: Differentiable Relaxations, Algorithms, Operators, and Simulator». 2023. International Conference on Machine Learning, Honolulu, Hawaii.

5. Manduchi* L, Vandenhirtz* M, Ryser A, Vogt JE. «Tree Variational Autoencoder». 2023. 36th Conference on Neural Information Processing Systems. New Orleans, USA.

6. Böni A, Menard T, Ryser A, Lestoille M, Ravi DK, Branscheidt M, Vogt JE, Luft AR, Easthope CA. «The Handshake: Merging clinical and data-driven therapy target selection processes forgait quality». 2023. Motek European User Group Meeting. Cereneo Clinic in Vitznau, Schweiz.

7. Böni A, Menard T, Ryser A, Lestoille M, Ravi DK, Branscheidt M, Vogt JE, Luft AR, Easthope CA. «Handshake-algorithm: AI-Driven clinical decision support for post-stroke gaitrehabilitation». 2023. International Society of Gait and Posture Research. Brisbane, Australien.

8. Kasties V, Moser NH, Zamora S, Maffei T, Sassenburg R, Ferster ML, Easthope CA, Baumann CR, Luft AR, Huber R, Branscheidt M, Maric A. «Processing of musical cues in the context of targeted memory reactivation for lower-limb motor learning». 2023. Psychologie und Gehirn. Tübingen, Deutschland.

9. Moser NH, Kasties V, et al., Branscheidt M, Maric A. «Sleep tight, move right: The role of targeted memory reactivation in motor learning». 2023. Interdisciplinary College Spring School. Guenne, Deutschland.

10. Zamora SA, Kasties VI, Moser NH, Easthope CA, Ferster ML, Maric A, Luft AR, Huber R, Branscheidt M. 2022. «Targeted memory reactivation of feedback-based motor adaptation learning». World Conference of Neurorehabilitation. Wien, Österreich

11. Salzmann L, Bichsel O, Rohr-Fukuma M, Stieglitz LH, Oertel MF, Bujan B, Jedrysiak P, Imbach LL, Lambercy O, Gassert R. «Effects of visual DBS-neurofeedback on movement quality in Parkinson’s disease». rtFIN, 2024, Heidelberg, Deutschland.

12. Jelitto R, Lestoille M, Luft AR, Gassert R, Lambercy O, Easthope CA. «Developing personalized augmented feedback for gait rehabilitation: a co-design process». Poster presented at: World Conference of NeuroRehabilitation 2024, Vancouver, Kanada.

13. Naef et al. «Developing personalized augmented feedback for gait rehabilitation: a co-design process». Poster presented at: ZNZ 2024, Zürich, Schweiz.

14. Naef et al. «Towards Personalized Feedback for Gait Rehabilitation: Influence of Visual and Vibrotactile Feedback on Gait Asymmetry in Healthy Participants». Poster presented at: ZNZ; 2024; Zürich, Schweiz.

15. C Lang, NB Singh, DK Ravi. «Closing the gap between Lab and Real-World: Translating outcomes of gait interventions in Parkinson’s disease». ICAMPAM 2024, Rennes, Frankreich.

16. Jelitto R, Lestoille M, Luft AR, Gassert R, Lambercy O, Easthope CA. «Developing personalized augmented feedback for gait rehabilitation: a co-design process». World Conference of NeuroRehabilitation, 2024, Vancouver,Kanada.

17. Naef A, et al. «Developing personalized augmented feedback for gait rehabilitation: a co-design process». ZNZ, 2024, Zürich, Schweiz.

18. Naef A, et al. «Towards Personalized Feedback for Gait Rehabilitation: Influence of Visual and Vibrotactile Feedback on Gait Asymmetry in Healthy Participants». ZNZ, 2024, Zürich, Schweiz.

1. Moll H, Frey E, Gerber P, Geidl B, Kaufmann M, Braun J, Beuschlein F, Puhan MA, Yebyo HG. «GLP-1 receptor agonists for weight reduction in people living with obesity but without diabetes: a living benefit-harm modelling study», EClinicalMedicine. 2024 May 27;73:102661.

2. Erdil E, Becker AS, Schwyzer M, Martinez-Tellez B, Ruiz JR, Sartoretti T, Vargas HA, Burger AI, Chirindel A, Wild D, Zamboni N, Deplancke B, Gardeux V, Maushart CI, Betz MJ, Wolfrum C, Konukoglu E. «Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks». Nat Commun. 2024 Sep 27;15(1):8402. Erratum in: Nat Commun. 2024 Nov 19;15(1):10022.

3. Sangalli S, Erdil E, Konukoglu E. «Expert load matters: operating networks at high accuracy and low manual effort». arXiv:2308.05035.

4. Cekmeceli K, Himmetoglu M, Tombak GI, Susmelj A, Erdil E, Konukoglu E. «Do Vision Foundation Models Enhance Domain Generalization in Medical Image Segmentation? » . arXiv:2409.07960.

Internationale Konferenzbeiträge:

1. McCallin, S. «Emerging Strategies to Tackle AMR: Bacteriophages and their Potential in Urology». S BAUS 2024, Birmingham, UK.2. McCallin, S. «Bacteriophage therapy plus fecal microbiota transplantation to treat recurrent urinary tract infections». Poster presented at: ESCMID Global 2024, Barcelona, Spanien.

3. McCallin, S.: «Key variables in clinical research to assess efficacy of phage therapy». ESCMID Global 2024, Barcelona, Spanien.

4. McCallin, S. «What role do Swiss and Indian industry play in countering antimicrobial resistance (AMR)?». Panel discussion The Swiss-Indian AMR Industry Roundtable (World Economic Forum), Davos, Schweiz.

5. McCallin, S. «International registry for patients treated with phage therapy». Workshop for the Sustainable Development of Phage Therapy (WHO), Tiflis, Georgien